GSM5107443: AITC2; Xanthomonas campestris pv. campestris; RNA-Seq - SRA

SRX10170287: GSM5107443: AITC2; Xanthomonas campestris pv. campestris; RNA-Seq
1 ILLUMINA (Illumina HiSeq 2000) run: 12.9M spots, 951.7M bases, 383.7Mb downloads

Submitted by: NCBI (GEO)

Study: Transcriptomic response of Xanthomonas campestris pv. campestris after exposure to allyl-isothiocyanate and indol-3 carbinol

PRJNA704950 • SRP308233 • All experiments • All runs

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We performed a transcriptomic analysis of the necrotrophic bacteria Xanthomonas campestris pv. campestris exposed to two different isothiocyanates (allyl-isothiocyanate and indol-3-carbinol), searching for mechanisms of adaptation and detoxification of these chemicals. Overall design: Three comparisons were performed: allyl-isothiocyanate vs control, indol-3-carbinol vs control and allyl-isothiocyanate vs indol-3-carbinol. Two repetitions of each treatment were performed.

Sample: AITC2

SAMN18058664 • SRS8320382 • All experiments • All runs

Organism: Xanthomonas campestris pv. campestris

Library:

Instrument: Illumina HiSeq 2000

Strategy: RNA-Seq

Source: TRANSCRIPTOMIC

Selection: cDNA

Layout: SINGLE

Construction protocol: RNA was extracted with RNAspin Mini RNA isolation Kit (GE Healthcare) RNA-Seq. RNA-Seq libraries were created using the NEBNextUltra RNA Library Prep Kit for Illumina

Experiment attributes:

GEO Accession: GSM5107443

Links:

NCBI link: NCBI Entrez (gds)

Runs: 1 run, 12.9M spots, 951.7M bases, 383.7Mb

Run	# of Spots	# of Bases	Size	Published
SRR13785105	12,874,490	951.7M	383.7Mb	2021-09-09

ID:: 13297863

SRA

Sequence Read Archive

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